Agent enhanced human collaboration: interactive visualizations of molecular force field simulations

By: Dion Whitehead, Open Molecular Software Foundation and Jennifer A Clark, Open Force Field Initiative

omsf.substack.com

Unified alchemical network visualizations across the web, notebooks, and terminal: alchemy-viz for OpenFE

alchemy-viz turns any OpenFE object (ligands, protein complexes, ligand and alchemical networks) into interactive visualizations

omsf.substack.com

AI opens a new front in browser wars

Whether made by you or AI, standalone web pages ("web artifacts") are a web primitive and open science depends on them staying open

Stealing scientific progress is fair game unless we protect it

OpenAI and Anthropic are racing towards knowing where real-time research attention is, and capturing the value of it. This is dangerous for open science and scientific progress.

Blob storage is a solved problem- what about compute?

Cheap and simple data blob storage is widely available and relatively easy to access and use. However, easily applying the right kind of compute is still lab...

Metapages- publish, embed, edit, share composable complete applications

This is a deeper dive into an example metapage, that runs python, creates plots using matplotlib.

A New Kind of Scientific Publishing

Scientific papers are static artifacts. You read them, but that is about the limit of your interaction.

URL Configured Websites

URLs can safely and effectively store user created code or configuration (even credentials) (access to things). URLs can also . This allows anyone with t...

Justfiles - universal command control

flowchart LR